Q5S007

PTMD Annotation Information


※ Protein Information

Tag Content
UniProt Accession LRRK2_HUMAN; Q5S007;
Entrez ID 120892
GenBank Protein ID
GenBank Nucleotide ID
Protein Name Leucine-rich repeat serine/threonine-protein kinase 2 (EC 2.7.11.1) (Dardarin)
Gene Name LRRK2; PARK8
Organism Homo sapiens
NCBI Taxa ID 9606
Functional DescriptionPositively regulates autophagy through a calcium-dependent activation of the CaMKK/AMPK signaling pathway. The process involves activation of nicotinic acid adenine dinucleotide phosphate (NAADP) receptors, increase in lysosomal pH, and calcium release from lysosomes. Together with RAB29, plays a role in the retrograde trafficking pathway for recycling proteins, such as mannose 6 phosphate receptor (M6PR), between lysosomes and the Golgi apparatus in a retromer-dependent manner. Regulates neuronal process morphology in the intact central nervous system (CNS). Plays a role in synaptic vesicle trafficking. Phosphorylates PRDX3. Has GTPase activity. May play a role in the phosphorylation of proteins central to Parkinson disease.
Sequence
(Fasta)
MASGSCQGCE EDEETLKKLI VRLNNVQEGK QIETLVQILE DLLVFTYSER ASKLFQGKNI 60
HVPLLIVLDS YMRVASVQQV GWSLLCKLIE VCPGTMQSLM GPQDVGNDWE VLGVHQLILK 120
MLTVHNASVN LSVIGLKTLD LLLTSGKITL LILDEESDIF MLIFDAMHSF PANDEVQKLG 180
CKALHVLFER VSEEQLTEFV ENKDYMILLS ALTNFKDEEE IVLHVLHCLH SLAIPCNNVE 240
VLMSGNVRCY NIVVEAMKAF PMSERIQEVS CCLLHRLTLG NFFNILVLNE VHEFVVKAVQ 300
QYPENAALQI SALSCLALLT ETIFLNQDLE EKNENQENDD EGEEDKLFWL EACYKALTWH 360
RKNKHVQEAA CWALNNLLMY QNSLHEKIGD EDGHFPAHRE VMLSMLMHSS SKEVFQASAN 420
ALSTLLEQNV NFRKILLSKG IHLNVLELMQ KHIHSPEVAE SGCKMLNHLF EGSNTSLDIM 480
AAVVPKILTV MKRHETSLPV QLEALRAILH FIVPGMPEES REDTEFHHKL NMVKKQCFKN 540
DIHKLVLAAL NRFIGNPGIQ KCGLKVISSI VHFPDALEML SLEGAMDSVL HTLQMYPDDQ 600
EIQCLGLSLI GYLITKKNVF IGTGHLLAKI LVSSLYRFKD VAEIQTKGFQ TILAILKLSA 660
SFSKLLVHHS FDLVIFHQMS SNIMEQKDQQ FLNLCCKCFA KVAMDDYLKN VMLERACDQN 720
NSIMVECLLL LGADANQAKE GSSLICQVCE KESSPKLVEL LLNSGSREQD VRKALTISIG 780
KGDSQIISLL LRRLALDVAN NSICLGGFCI GKVEPSWLGP LFPDKTSNLR KQTNIASTLA 840
RMVIRYQMKS AVEEGTASGS DGNFSEDVLS KFDEWTFIPD SSMDSVFAQS DDLDSEGSEG 900
SFLVKKKSNS ISVGEFYRDA VLQRCSPNLQ RHSNSLGPIF DHEDLLKRKR KILSSDDSLR 960
SSKLQSHMRH SDSISSLASE REYITSLDLS ANELRDIDAL SQKCCISVHL EHLEKLELHQ 1020
NALTSFPQQL CETLKSLTHL DLHSNKFTSF PSYLLKMSCI ANLDVSRNDI GPSVVLDPTV 1080
KCPTLKQFNL SYNQLSFVPE NLTDVVEKLE QLILEGNKIS GICSPLRLKE LKILNLSKNH 1140
ISSLSENFLE ACPKVESFSA RMNFLAAMPF LPPSMTILKL SQNKFSCIPE AILNLPHLRS 1200
LDMSSNDIQY LPGPAHWKSL NLRELLFSHN QISILDLSEK AYLWSRVEKL HLSHNKLKEI 1260
PPEIGCLENL TSLDVSYNLE LRSFPNEMGK LSKIWDLPLD ELHLNFDFKH IGCKAKDIIR 1320
FLQQRLKKAV PYNRMKLMIV GNTGSGKTTL LQQLMKTKKS DLGMQSATVG IDVKDWPIQI 1380
RDKRKRDLVL NVWDFAGREE FYSTHPHFMT QRALYLAVYD LSKGQAEVDA MKPWLFNIKA 1440
RASSSPVILV GTHLDVSDEK QRKACMSKIT KELLNKRGFP AIRDYHFVNA TEESDALAKL 1500
RKTIINESLN FKIRDQLVVG QLIPDCYVEL EKIILSERKN VPIEFPVIDR KRLLQLVREN 1560
QLQLDENELP HAVHFLNESG VLLHFQDPAL QLSDLYFVEP KWLCKIMAQI LTVKVEGCPK 1620
HPKGIISRRD VEKFLSKKRK FPKNYMSQYF KLLEKFQIAL PIGEEYLLVP SSLSDHRPVI 1680
ELPHCENSEI IIRLYEMPYF PMGFWSRLIN RLLEISPYML SGRERALRPN RMYWRQGIYL 1740
NWSPEAYCLV GSEVLDNHPE SFLKITVPSC RKGCILLGQV VDHIDSLMEE WFPGLLEIDI 1800
CGEGETLLKK WALYSFNDGE EHQKILLDDL MKKAEEGDLL VNPDQPRLTI PISQIAPDLI 1860
LADLPRNIML NNDELEFEQA PEFLLGDGSF GSVYRAAYEG EEVAVKIFNK HTSLRLLRQE 1920
LVVLCHLHHP SLISLLAAGI RPRMLVMELA SKGSLDRLLQ QDKASLTRTL QHRIALHVAD 1980
GLRYLHSAMI IYRDLKPHNV LLFTLYPNAA IIAKIADYGI AQYCCRMGIK TSEGTPGFRA 2040
PEVARGNVIY NQQADVYSFG LLLYDILTTG GRIVEGLKFP NEFDELEIQG KLPDPVKEYG 2100
CAPWPMVEKL IKQCLKENPQ ERPTSAQVFD ILNSAELVCL TRRILLPKNV IVECMVATHH 2160
NSRNASIWLG CGHTDRGQLS FLDLNTEGYT SEEVADSRIL CLALVHLPVE KESWIVSGTQ 2220
SGTLLVINTE DGKKRHTLEK MTDSVTCLYC NSFSKQSKQK NFLLVGTADG KLAIFEDKTV 2280
KLKGAAPLKI LNIGNVSTPL MCLSESTNST ERNVMWGGCG TKIFSFSNDF TIQKLIETRT 2340
SQLFSYAAFS DSNIITVVVD TALYIAKQNS PVVEVWDKKT EKLCGLIDCV HFLREVMVKE 2400
NKESKHKMSY SGRVKTLCLQ KNTALWIGTG GGHILLLDLS TRRLIRVIYN FCNSVRVMMT 2460
AQLGSLKNVM LVLGYNRKNT EGTQKQKEIQ SCLTVWDINL PHEVQNLEKH IEVRKELAEK 2520
MRRTSVE 2528

※ PTM-Disease Association

NumPTMDiseaseCell TypeTypePTM SitePMID
1Serine PhosphorylationParkinson's diseaseNS95522004453
[Reference]: Phosphorylation of LRRK2 serines 955 and 973 is disrupted by Parkinson's disease mutations and LRRK2 pharmacological inhibition
2Serine PhosphorylationParkinson's diseaseNS97322004453
[Reference]: Phosphorylation of LRRK2 serines 955 and 973 is disrupted by Parkinson's disease mutations and LRRK2 pharmacological inhibition
3Serine PhosphorylationParkinson's diseasecell linePS129223241745
[Reference]: Together, these data demonstrate that some LRRK2 PD mutations enhance Ser1292 autophosphorylation in cultured cells and in brain lysates of BAC transgenic mic
4Serine PhosphorylationParkinson's diseaseCS144424351927
[Reference]: Phosphorylation at S1444 is strikingly reduced in the major PD-related LRRK2 mutations R1441C/G/H

※ Disease Cross-ref Annotation

DatabaseAnnotation
CTD (Curated)
(count: 6)
MESH:D002292 ; Carcinoma, Renal Cell
MESH:D004715 ; Endometriosis
MESH:D009410 ; Nerve Degeneration
MESH:D010300 ; Parkinson Disease
OMIM:607060 ; PARKINSON DISEASE 8, AUTOSOMAL DOMINANT
MESH:D020734 ; Parkinsonian Disorders
DisGeNet (Curated)
(count: 11)
(view all)
C0007134; Renal Cell Carcinoma
C0014175; Endometriosis
C0027746; Nerve Degeneration
C0030567; Parkinson Disease
C0036341; Schizophrenia
C0086132; Depressive Symptoms
HGMD
(count: 54)
(view all)
CD075458; Parkinson disease; Small deletions
CM074927; Parkinson disease; Missense/nonsense
CM073188; Parkinson disease; Missense/nonsense
CM074929; Parkinson disease; Missense/nonsense
CM073187; Parkinson disease; Missense/nonsense
CM081692; Parkinson disease; Missense/nonsense
GWASdb
(count: 38)
(view all)
rs7294619; Parkinson's disease; Parkinson's disease
rs7294619; Taste perception; sensory system disease
rs10878226; Taste perception; sensory system disease
rs1491942; Parkinson's disease; Parkinson's disease
rs1491941; Parkinson's disease; Parkinson's disease
rs11175655; Taste perception; sensory system disease

※ PTM Sites

PTM Modification Sites
Phosphorylation
(count: 93)
(view all)
1007      LSQKCCISVHLEHLE     dbPAF
1024      ELHQNALTSFPQQLC     dbPAF
1025      LHQNALTSFPQQLCE     dbPAF
1058      PSYLLKMSCIANLDV     dbPAF
1124      NKISGICSPLRLKEL     dbPAF
1157      EACPKVESFSARMNF     dbPAF
Ubiquitination
(count: 4)
1132      PLRLKELKILNLSKN     PLMD
412       MLMHSSSKEVFQASA     PLMD
905       SEGSFLVKKKSNSIS     PLMD
906       EGSFLVKKKSNSISV     PLMD
Glycation
(count: 1)
486       IMAAVVPKILTVMKR     PLMD

※ Protein-Protein Interaction

NetworkInteraction
ABSource